Mapping DNA/protein interactions by cross linking

Dissecting Fission Yeast Centromeres via SilencingRobin Allshire.

Localizing Replication Sites and Nuclear ProteinsAngela Taddei, Danièle Roche, Jean-Baptiste Sibarita, Sébastien Huart, Christèle Maison, Delphine Bailly, and Geneviève Almouzni.

Finding Downstream Target DNAs for Chromatin Proteins by X-CHIP in DrosophilaNicolas Nègre and Giacomo Cavalli.

Emerging Techniques: UV Laser Footprinting and Protein--DNA CrosslinkingStefan Dimitrov.

Nuclear Organization and Gene Expression: Visualization of Transcription and Higher Order Chromatin StructureRoel van Driel and Pernette J. Verschure.

Examining the Distribution of Telomeric and DNA Repair Proteins by ChrIP and Real-Time PCRKarine Dubrana.

Nuclear Organisation and Gene Silencing in LymphocytesAmanda Fisher and Matthias Merkenschlager.

Direct Visualization of Transcription Factor Binding to Regulatory Elements in Living CellsGordon L. Hager.

Part I. Chromatin Protein Complexes: Dynamic Assemblies in the NucleusDonna Jovin.

Isolation of Homeodomain Engrailed Target Genes by UV Cross-Linking and Chromatin IPFlorence Maschat.

Analysis of Chromatin Assembly, Chromatin Domains, and DNA Replication Using Xenopus SystemsJean-Marc Lemaitre, Yegor Vassetzky, and Marcel Méchali.

Binding Sights in Chromatin by X-ChIPAchim Breiling and Valerio Orlando.

Chromatin Immunoprecipitation in Budding YeastTomoyuki Tanaka.

ChIP with Native Chromatin: Advantages and Problems Relative to Methods Using Cross-Linked MaterialBryan Turner.

Highly Sensitive FISH in Combination with the Visualization of the Mammalian Genome: ArchitectureDaniele Zink.

Part II. Fly-FISHing: A Protocol to Localize Single Copy Genes inside the Nucleus in Whole Mount EmbryosMark J. Gemkow.
Part 2. Detailed Method for Immunoprecipitation of Unfixed Chromatin from Mammalian CellsLaura O'Neill and Bryan Turner.